Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008434.1 Corchorus olitorius cultivar O-4 contig08461, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1901
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28


Found at i:855 original size:21 final size:21

Alignment explanation


    Indices: 831--906  Score: 116
    Period size: 21  Copynumber: 3.6  Consensus size: 21

        821 CCGCCCATTA

                               * 
        831 CCGTGCCACCACCGGTTAAAC
          1 CCGTGCCACCACCGGTTAAGC

                                 
        852 CCGTGCCACCACCGGTTAAGC
          1 CCGTGCCACCACCGGTTAAGC

                           *  *  
        873 CCGTGCCACCACCGGCTATGC
          1 CCGTGCCACCACCGGTTAAGC

                    *    
        894 CCGTGCCATCACC
          1 CCGTGCCACCACC

        907 ATTCAGTGCC


Statistics
Matches: 51,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  21   51  1.00

ACGTcount: A:0.18, C:0.46, G:0.21, T:0.14


Consensus pattern (21 bp):   
CCGTGCCACCACCGGTTAAGC

Done.