Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008435.1 Corchorus olitorius cultivar O-4 contig08462, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:913 original size:58 final size:58

Alignment explanation


    Indices: 842--1023  Score: 328
    Period size: 58  Copynumber: 3.1  Consensus size: 58

        832 TTTAAAAAAA

                 *                                             *      
        842 AAAACAAGATGAGATTTTAAATTGAAAACTCTCTAACAGAGACCTCGAACATGATTTT
          1 AAAACGAGATGAGATTTTAAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTT

                                     *                   *            
        900 AAAACGAGATGAGATTTTAAATTGATAACTCTCTAACAGAGACCTTGAACAGGATTTT
          1 AAAACGAGATGAGATTTTAAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTT

                                                                      
        958 AAAACGAGATGAGATTTTAAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTT
          1 AAAACGAGATGAGATTTTAAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTT

                    
       1016 AAAACGAG
          1 AAAACGAG


Statistics
Matches: 118,  Mismatches: 6, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  58  118  1.00

ACGTcount: A:0.42, C:0.15, G:0.16, T:0.26


Consensus pattern (58 bp):   
AAAACGAGATGAGATTTTAAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTT
Done.