Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008439.1 Corchorus olitorius cultivar O-4 contig08466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1063
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28


Found at i:807 original size:21 final size:21

Alignment explanation


    Indices: 783--895  Score: 149
    Period size: 21  Copynumber: 5.4  Consensus size: 21

        773 CTTAGGCATT

                 *       *       
        783 TCCAAAGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        804 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *          * 
        825 TCCAATGAACTTGGAACCTGC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        846 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
        867 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        888 TCCAATGA
          1 TCCAATGA

        896 ACTTCTAGCA


Statistics
Matches: 84,  Mismatches: 7, Indels: 2
        0.90            0.08        0.02

Matches are distributed among these distances:
  20    2  0.02
  21   82  0.98

ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Found at i:919 original size:10 final size:10

Alignment explanation


    Indices: 906--934  Score: 58
    Period size: 10  Copynumber: 2.9  Consensus size: 10

        896 ACTTCTAGCA

                      
        906 TCTTCAAGCT
          1 TCTTCAAGCT

                      
        916 TCTTCAAGCT
          1 TCTTCAAGCT

                     
        926 TCTTCAAGC
          1 TCTTCAAGC

        935 CTCCTTGCCG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   19  1.00

ACGTcount: A:0.21, C:0.31, G:0.10, T:0.38


Consensus pattern (10 bp):   
TCTTCAAGCT
Done.