Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008443.1 Corchorus olitorius cultivar O-4 contig08470, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 814

Length: 1358
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35


Found at i:627 original size:27 final size:27

Alignment explanation


    Indices: 595--650  Score: 112
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        585 CACTTCTTTA

                                       
        595 TATACTTAATGCAAAGTTCTATTTAAT
          1 TATACTTAATGCAAAGTTCTATTTAAT

                                       
        622 TATACTTAATGCAAAGTTCTATTTAAT
          1 TATACTTAATGCAAAGTTCTATTTAAT

              
        649 TA
          1 TA

        651 AAAAATATAG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.38, C:0.11, G:0.07, T:0.45


Consensus pattern (27 bp):   
TATACTTAATGCAAAGTTCTATTTAAT
Done.