Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008446.1 Corchorus olitorius cultivar O-4 contig08473, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1168
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29


Found at i:831 original size:21 final size:20

Alignment explanation


    Indices: 805--879  Score: 87
    Period size: 21  Copynumber: 3.5  Consensus size: 20

        795 CTTAGGCAAT

                         *       
        805 TCCAATAAGCTTGAAACCTTC
          1 TCCAATAA-CTTGGAACCTTC

                    **           
        826 TCCAATGATTTTGGAACCTTC
          1 TCCAAT-AACTTGGAACCTTC

                                 
        847 TCCAATGAACTTGGAACCTTC
          1 TCCAAT-AACTTGGAACCTTC

                        
        868 TCCAATGAACTT
          1 TCCAAT-AACTT

        880 CTAGCATCTT


Statistics
Matches: 48,  Mismatches: 5, Indels: 2
        0.87            0.09        0.04

Matches are distributed among these distances:
  21   47  0.98
  22    1  0.02

ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32


Consensus pattern (20 bp):   
TCCAATAACTTGGAACCTTC
Done.