Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008447.1 Corchorus olitorius cultivar O-4 contig08474, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:624 original size:21 final size:19

Alignment explanation


    Indices: 588--629  Score: 57
    Period size: 21  Copynumber: 2.1  Consensus size: 19

        578 TATATAATGC

                 *             
        588 ATATTTTATTTATATATTA
          1 ATATTCTATTTATATATTA

                                 
        607 ATATTCTATATTATTATATTA
          1 ATATTCTAT-TTA-TATATTA

              
        628 AT
          1 AT

        630 TTATATAAAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  19    8  0.40
  20    3  0.15
  21    9  0.45

ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60


Consensus pattern (19 bp):   
ATATTCTATTTATATATTA

Found at i:642 original size:18 final size:18

Alignment explanation


    Indices: 621--658  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        611 TCTATATTAT

                              
        621 TATATTAATTTATATAAA
          1 TATATTAATTTATATAAA

                  *        *  
        639 TATATTCATTTATATGAA
          1 TATATTAATTTATATAAA

              
        657 TA
          1 TA

        659 ATACTCTATT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50


Consensus pattern (18 bp):   
TATATTAATTTATATAAA
Done.