Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008454.1 Corchorus olitorius cultivar O-4 contig08481, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2071
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33


Found at i:1909 original size:36 final size:37

Alignment explanation


    Indices: 1862--1934  Score: 112
    Period size: 36  Copynumber: 2.0  Consensus size: 37

       1852 AAAATATATA

                                           *     
       1862 AGTCATGGGTTAGATACCC-TACAATATCAGTAATTC
          1 AGTCATGGGTTAGATACCCATACAATATCAGCAATTC

                         *                       
       1898 AGTCATGGGTTAGGTACCCTATACAATATCAGCAATT
          1 AGTCATGGGTTAGATACCC-ATACAATATCAGCAATT

       1935 AATAGATTGT


Statistics
Matches: 33,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
  36   18  0.55
  38   15  0.45

ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Consensus pattern (37 bp):   
AGTCATGGGTTAGATACCCATACAATATCAGCAATTC
Done.