Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008464.1 Corchorus olitorius cultivar O-4 contig08491, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 701

Length: 1169
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26


Found at i:1050 original size:156 final size:156

Alignment explanation


    Indices: 766--1137  Score: 665
    Period size: 156  Copynumber: 2.4  Consensus size: 156

        756 TCCCGTGTCA

                                  *                        *                 
        766 CAAAATAACAAGTGTTCAAAATTAGCTAAGAACTTCACAATGGACTAATCTTACCAAAATGATTA
          1 CAAAATAACAAGTGTTCAAAATGAGCTAAGAACTTCACAATGGACTAGTCTTACCAAAATGATTA

                                                                             
        831 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTATGGTTTGCCAAATCGAAGACGATTTTTAAA
         66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTATGGTTTGCCAAATCGAAGACGATTTTTAAA

                                     * 
        896 ACCGAACTAATGGGCC-CTGAATGGTC
        131 ACCGAACTAATGGGCCTC-GAATGGCC

                                                                             
        922 CAAAATAACAAGTGTTCAAAATGAGCTAAGAACTTCACAATGGACTAGTCTTACCAAAATGATTA
          1 CAAAATAACAAGTGTTCAAAATGAGCTAAGAACTTCACAATGGACTAGTCTTACCAAAATGATTA

                     *                        * *                            
        987 TAGTTAGGCGATAAACAATGGAAAGAAAAGCATTGTTGTTTGCCAAATCGAAGACGATTTTTAAA
         66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTATGGTTTGCCAAATCGAAGACGATTTTTAAA

               *                      
       1052 ACCTAACTAATGGGCCTCGAATGGCC
        131 ACCGAACTAATGGGCCTCGAATGGCC

                                                                        
       1078 CAAAATAACAAGTGTTCAAAATGAGCTAAGAACTTCACAATGGACTAGTCTTACCAAAAT
          1 CAAAATAACAAGTGTTCAAAATGAGCTAAGAACTTCACAATGGACTAGTCTTACCAAAAT

       1138 TGATACGAAT


Statistics
Matches: 208,  Mismatches: 7, Indels: 2
        0.96            0.03        0.01

Matches are distributed among these distances:
 156  207  1.00
 157    1  0.00

ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25


Consensus pattern (156 bp):   
CAAAATAACAAGTGTTCAAAATGAGCTAAGAACTTCACAATGGACTAGTCTTACCAAAATGATTA
TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTATGGTTTGCCAAATCGAAGACGATTTTTAAA
ACCGAACTAATGGGCCTCGAATGGCC
Done.