Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008475.1 Corchorus olitorius cultivar O-4 contig08502, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 850

Length: 1418
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31


Found at i:17 original size:8 final size:8

Alignment explanation


    Indices: 5--30  Score: 52
    Period size: 8  Copynumber: 3.2  Consensus size: 8

          1 ATCT

                    
          5 TATCTTAC
          1 TATCTTAC

                    
         13 TATCTTAC
          1 TATCTTAC

                    
         21 TATCTTAC
          1 TATCTTAC

              
         29 TA
          1 TA

         31 ACTATATAAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50


Consensus pattern (8 bp):   
TATCTTAC
Done.