Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008478.1 Corchorus olitorius cultivar O-4 contig08505, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1025
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29


Found at i:162 original size:10 final size:11

Alignment explanation


    Indices: 142--166  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

        132 TCCATTCTTG

                       
        142 TTTCTTTTTTT
          1 TTTCTTTTTTT

                       
        153 TTTCTTTTTTT
          1 TTTCTTTTTTT

               
        164 TTT
          1 TTT

        167 AGAACAAGAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92


Consensus pattern (11 bp):   
TTTCTTTTTTT
Done.