Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008479.1 Corchorus olitorius cultivar O-4 contig08506, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 899

Length: 1499
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:265 original size:52 final size:52

Alignment explanation


    Indices: 203--338  Score: 218
    Period size: 52  Copynumber: 2.6  Consensus size: 52

        193 CAGCTTTAAG

                       *                                        
        203 TTTTCAAATTGAGAAAGTTCCCGCCAGTTTTCAAAGTATTCAATCTAGCCCT
          1 TTTTCAAATTGGGAAAGTTCCCGCCAGTTTTCAAAGTATTCAATCTAGCCCT

                                  *                          *  
        255 TTTTCAAATTGGGAAAGTTCCCACCAGTTTTCAAAGTATTCAATCTAGCTCT
          1 TTTTCAAATTGGGAAAGTTCCCGCCAGTTTTCAAAGTATTCAATCTAGCCCT

            *                      *        
        307 CTTTCAAATTGGGAAAGTTCCCGTCAGGTTTT
          1 TTTTCAAATTGGGAAAGTTCCCGCCA-GTTTT

        339 AGTTTTCAAT


Statistics
Matches: 77,  Mismatches: 6, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
  52   72  0.94
  53    5  0.06

ACGTcount: A:0.27, C:0.21, G:0.15, T:0.36


Consensus pattern (52 bp):   
TTTTCAAATTGGGAAAGTTCCCGCCAGTTTTCAAAGTATTCAATCTAGCCCT
Done.