Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000848.1 Corchorus olitorius cultivar O-4 contig00848, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1036
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40


Found at i:677 original size:14 final size:16

Alignment explanation


    Indices: 643--681  Score: 64
    Period size: 14  Copynumber: 2.6  Consensus size: 16

        633 TTACTTTGTT

                            
        643 TTGTTTTCTAGTTTAA
          1 TTGTTTTCTAGTTTAA

                            
        659 TTGTTTTCT-GTTT-A
          1 TTGTTTTCTAGTTTAA

                     
        673 TTGTTTTCT
          1 TTGTTTTCT

        682 TGTCACCTCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  14   10  0.43
  15    4  0.17
  16    9  0.39

ACGTcount: A:0.10, C:0.08, G:0.13, T:0.69


Consensus pattern (16 bp):   
TTGTTTTCTAGTTTAA
Done.