Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008480.1 Corchorus olitorius cultivar O-4 contig08507, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 643

Length: 1073
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.26


Found at i:597 original size:50 final size:48

Alignment explanation


    Indices: 492--638  Score: 156
    Period size: 49  Copynumber: 3.0  Consensus size: 48

        482 GAGCGTGCCA

                                    *         *       *      
        492 ATCAATTTTGTCA--AAAAATTGATAAAAAGTGCGATGAAAATTAAAAG
          1 ATCAATTTTGT-AGTAAAAATTGAGAAAAAGTGCAATGAAAAATAAAAG

                        ** *                                   
        539 ATCAATTTTGTCTTTTAAAATTGAGAAAAAGATGCAA-GTAAAAATAAAAG
          1 ATCAATTTTGT-AGTAAAAATTGAGAAAAAG-TGCAATG-AAAAATAAAAG

            *                                *       *      
        589 TTCAATTTTGTAGTAAAAATTGAGAAAAAGTGCTATGAAAAGTAAAAG
          1 ATCAATTTTGTAGTAAAAATTGAGAAAAAGTGCAATGAAAAATAAAAG

              
        637 AT
          1 AT

        639 TGCTTGGAGT


Statistics
Matches: 83,  Mismatches: 12, Indels: 9
        0.80            0.12        0.09

Matches are distributed among these distances:
  47   12  0.14
  48   15  0.18
  49   32  0.39
  50   24  0.29

ACGTcount: A:0.50, C:0.05, G:0.16, T:0.29


Consensus pattern (48 bp):   
ATCAATTTTGTAGTAAAAATTGAGAAAAAGTGCAATGAAAAATAAAAG
Done.