Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008488.1 Corchorus olitorius cultivar O-4 contig08515, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 750

Length: 1250
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34


Found at i:748 original size:13 final size:12

Alignment explanation


    Indices: 730--774  Score: 54
    Period size: 14  Copynumber: 3.5  Consensus size: 12

        720 ATTTTATTAC

                         
        730 TGTTTTATTAAAT
          1 TGTTTTA-TAAAT

                        
        743 TGTTTTATAAAT
          1 TGTTTTATAAAT

            *             
        755 GGTTTTAAATAAAT
          1 TGTTTT--ATAAAT

                  
        769 TGTTTT
          1 TGTTTT

        775 GGATGCATGA


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  12   10  0.36
  13    7  0.25
  14   11  0.39

ACGTcount: A:0.31, C:0.00, G:0.11, T:0.58


Consensus pattern (12 bp):   
TGTTTTATAAAT
Done.