Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008497.1 Corchorus olitorius cultivar O-4 contig08524, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2402
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:1142 original size:19 final size:19

Alignment explanation


    Indices: 1118--1158  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       1108 AGCACTTCTA

                               
       1118 ATGCGTATTTTCCCAAAAC
          1 ATGCGTATTTTCCCAAAAC

                               
       1137 ATGCGTATTTTCCCAAAAC
          1 ATGCGTATTTTCCCAAAAC

               
       1156 ATG
          1 ATG

       1159 AGAATTTGTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32


Consensus pattern (19 bp):   
ATGCGTATTTTCCCAAAAC

Found at i:1165 original size:19 final size:19

Alignment explanation


    Indices: 1124--1165  Score: 66
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       1114 TCTAATGCGT

                            * *
       1124 ATTTTCCCAAAACATGCGT
          1 ATTTTCCCAAAACATGAGA

                               
       1143 ATTTTCCCAAAACATGAGA
          1 ATTTTCCCAAAACATGAGA

                
       1162 ATTT
          1 ATTT

       1166 GTGAAGGATA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33


Consensus pattern (19 bp):   
ATTTTCCCAAAACATGAGA
Done.