Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000085.1 Corchorus olitorius cultivar O-4 contig00085, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 693

Length: 1156
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27


Found at i:1024 original size:76 final size:76

Alignment explanation


    Indices: 887--1031  Score: 170
    Period size: 76  Copynumber: 1.9  Consensus size: 76

        877 ACAAGGACCT

                                *                              *           * 
        887 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGAACCCAGGT
          1 CGACTCCACCTGGGCGCCCAAATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT

                       
        952 GGGCAGTGCCA
         66 GGGCAGTGCCA

                    *     *              *                            **     
        963 CGACTCCAGCTGGGTGCCCAAATGGTTTGTC-TGAAG-ACCCATGT-GTTTCGCCTGATCACCCA
          1 CGACTCCACCTGGGCGCCCAAATGG-TTGCCTTG-AGCACCCATGTGGTTT-GCCTGAGAACCCA

                   
       1025 GATGGGC
         63 GATGGGC

       1032 TGTGTCATAG


Statistics
Matches: 58,  Mismatches: 8, Indels: 6
        0.81            0.11        0.08

Matches are distributed among these distances:
  75    4  0.07
  76   48  0.83
  77    6  0.10

ACGTcount: A:0.18, C:0.30, G:0.29, T:0.23


Consensus pattern (76 bp):   
CGACTCCACCTGGGCGCCCAAATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
GGGCAGTGCCA
Done.