Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008520.1 Corchorus olitorius cultivar O-4 contig08547, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 867

Length: 1445
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.35


Found at i:637 original size:34 final size:33

Alignment explanation


    Indices: 549--637  Score: 117
    Period size: 33  Copynumber: 2.6  Consensus size: 33

        539 GCAAAGAGTG

                          *                   
        549 TTTTAGATGTTGTTAGTGATGATACTAAACCTAA
          1 TTTTAG-TGTTGTTTGTGATGATACTAAACCTAA

               *                        *    
        583 TTTGAGTGTTGTTTGTGATGATACTAAATCT-A
          1 TTTTAGTGTTGTTTGTGATGATACTAAACCTAA

                                   
        615 TTTTAGCTGTTGTTTTGTGATGA
          1 TTTTAG-TGTTG-TTTGTGATGA

        638 AACAAATTCT


Statistics
Matches: 49,  Mismatches: 4, Indels: 4
        0.86            0.07        0.07

Matches are distributed among these distances:
  32    6  0.12
  33   28  0.57
  34   15  0.31

ACGTcount: A:0.25, C:0.07, G:0.21, T:0.47


Consensus pattern (33 bp):   
TTTTAGTGTTGTTTGTGATGATACTAAACCTAA
Done.