Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008525.1 Corchorus olitorius cultivar O-4 contig08552, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24


Found at i:509 original size:15 final size:14

Alignment explanation


    Indices: 481--517  Score: 56
    Period size: 15  Copynumber: 2.6  Consensus size: 14

        471 GTAAAACATT

                          
        481 AAAACAAACAAAAC
          1 AAAACAAACAAAAC

            *              
        495 CAAACAAACCAAAAC
          1 AAAACAAA-CAAAAC

                    
        510 AAAACAAA
          1 AAAACAAA

        518 GCAACCATTT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  14    7  0.35
  15   13  0.65

ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00


Consensus pattern (14 bp):   
AAAACAAACAAAAC
Done.