Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008526.1 Corchorus olitorius cultivar O-4 contig08553, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28


Found at i:432 original size:39 final size:39

Alignment explanation


    Indices: 388--470  Score: 107
    Period size: 39  Copynumber: 2.1  Consensus size: 39

        378 AAAGGCCAAT

                         *                           
        388 GGGCCAGTCAGCATGGCCCAA-CGCG-CAAGCCAGGCGCGC
          1 GGGCCAG-C-GCACGGCCCAAGCGCGCCAAGCCAGGCGCGC

                                       *  *        
        427 GGGCCAGCGCACGGCCCAAGCGCGCCAGGCTAGGCGCGC
          1 GGGCCAGCGCACGGCCCAAGCGCGCCAAGCCAGGCGCGC

                 
        466 GGGCC
          1 GGGCC

        471 TGCTCAAGGT


Statistics
Matches: 39,  Mismatches: 3, Indels: 4
        0.85            0.07        0.09

Matches are distributed among these distances:
  37   10  0.26
  38    5  0.13
  39   24  0.62

ACGTcount: A:0.17, C:0.40, G:0.40, T:0.04


Consensus pattern (39 bp):   
GGGCCAGCGCACGGCCCAAGCGCGCCAAGCCAGGCGCGC
Done.