Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008528.1 Corchorus olitorius cultivar O-4 contig08555, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1062
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:512 original size:19 final size:20

Alignment explanation


    Indices: 488--527  Score: 55
    Period size: 19  Copynumber: 2.0  Consensus size: 20

        478 GAAAAAAACT

                                
        488 TGGGCTGACC-CCCAGCCCA
          1 TGGGCTGACCACCCAGCCCA

                   *             
        507 TGGGCTGCCCAACCCAGCCCA
          1 TGGGCTGACC-ACCCAGCCCA

        528 AGAAACTAAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  19    9  0.50
  21    9  0.50

ACGTcount: A:0.17, C:0.47, G:0.25, T:0.10


Consensus pattern (20 bp):   
TGGGCTGACCACCCAGCCCA

Found at i:690 original size:11 final size:11

Alignment explanation


    Indices: 674--700  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

        664 TGACCCCCCA

                       
        674 GCCCATGGGCT
          1 GCCCATGGGCT

                       
        685 GCCCATGGGCT
          1 GCCCATGGGCT

                 
        696 GCCCA
          1 GCCCA

        701 ACCCAGCCCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.11, C:0.41, G:0.33, T:0.15


Consensus pattern (11 bp):   
GCCCATGGGCT
Done.