Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000853.1 Corchorus olitorius cultivar O-4 contig00853, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1075
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40


Found at i:325 original size:6 final size:6

Alignment explanation


    Indices: 314--349  Score: 72
    Period size: 6  Copynumber: 6.0  Consensus size: 6

        304 AGAGTGGGAA

                                                     
        314 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
          1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT

        350 CCGGTTACTT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17


Consensus pattern (6 bp):   
AAAAAT

Done.