Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008530.1 Corchorus olitorius cultivar O-4 contig08557, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1108
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33


Found at i:621 original size:6 final size:6

Alignment explanation


    Indices: 610--642  Score: 66
    Period size: 6  Copynumber: 5.5  Consensus size: 6

        600 AATACTCTTT

                                                  
        610 AACTCG AACTCG AACTCG AACTCG AACTCG AAC
          1 AACTCG AACTCG AACTCG AACTCG AACTCG AAC

        643 AGTTCAATAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.36, C:0.33, G:0.15, T:0.15


Consensus pattern (6 bp):   
AACTCG

Done.