Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008536.1 Corchorus olitorius cultivar O-4 contig08563, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1095
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35


Found at i:28 original size:21 final size:21

Alignment explanation


    Indices: 2--55  Score: 99
    Period size: 21  Copynumber: 2.6  Consensus size: 21

          1 A

                                 
          2 TATCAATTGATTTATAATCTC
          1 TATCAATTGATTTATAATCTC

                                 
         23 TATCAATTGATTTATAATCTC
          1 TATCAATTGATTTATAATCTC

                   *    
         44 TATCAATAGATT
          1 TATCAATTGATT

         56 AAATAGTATT


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   32  1.00

ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46


Consensus pattern (21 bp):   
TATCAATTGATTTATAATCTC
Done.