Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008539.1 Corchorus olitorius cultivar O-4 contig08566, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1987
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28


Found at i:512 original size:17 final size:18

Alignment explanation


    Indices: 479--512  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

        469 TTTAAAAAAA

                        *     
        479 GTATTTAATAATTAAATT
          1 GTATTTAATAATAAAATT

                             
        497 GTATTT-ATAATAAAAT
          1 GTATTTAATAATAAAAT

        513 ATAAGAAAAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    9  0.60
  18    6  0.40

ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47


Consensus pattern (18 bp):   
GTATTTAATAATAAAATT
Done.