Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008557.1 Corchorus olitorius cultivar O-4 contig08584, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 684

Length: 1141
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33


Found at i:1099 original size:21 final size:21

Alignment explanation


    Indices: 1064--1105  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1054 CATGGGTGTG

                    *             
       1064 TGTGATTGTTTGGTTTGGTAGA
          1 TGTGATTGATTGGTTT-GTAGA

                                 
       1086 TGTGA-TGATTGGTTTGTAGA
          1 TGTGATTGATTGGTTTGTAGA

       1106 GACCGAGCGA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  20    5  0.26
  21    9  0.47
  22    5  0.26

ACGTcount: A:0.17, C:0.00, G:0.36, T:0.48


Consensus pattern (21 bp):   
TGTGATTGATTGGTTTGTAGA
Done.