Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000856.1 Corchorus olitorius cultivar O-4 contig00856, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1063
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36


Found at i:724 original size:42 final size:42

Alignment explanation


    Indices: 678--764  Score: 156
    Period size: 42  Copynumber: 2.1  Consensus size: 42

        668 CATTATCTTA

                              *                       
        678 ATTCTACTCCATCTCTAGGTAATTCATCAAAATAAAACTAAT
          1 ATTCTACTCCATCTCTAGATAATTCATCAAAATAAAACTAAT

                                                *     
        720 ATTCTACTCCATCTCTAGATAATTCATCAAAATAAAGCTAAT
          1 ATTCTACTCCATCTCTAGATAATTCATCAAAATAAAACTAAT

               
        762 ATT
          1 ATT

        765 AATTGTTGCT


Statistics
Matches: 43,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  42   43  1.00

ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34


Consensus pattern (42 bp):   
ATTCTACTCCATCTCTAGATAATTCATCAAAATAAAACTAAT
Done.