Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008566.1 Corchorus olitorius cultivar O-4 contig08593, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 882

Length: 1471
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31


Found at i:213 original size:48 final size:48

Alignment explanation


    Indices: 152--251  Score: 182
    Period size: 48  Copynumber: 2.1  Consensus size: 48

        142 CTTAACTCCA

                                                            
        152 TTAATTGATGTTGTTAAGAGAATTAAAAGCTGGAAAATACTCCATGCG
          1 TTAATTGATGTTGTTAAGAGAATTAAAAGCTGGAAAATACTCCATGCG

                                *                    *      
        200 TTAATTGATGTTGTTAAGAGTATTAAAAGCTGGAAAATACTTCATGCG
          1 TTAATTGATGTTGTTAAGAGAATTAAAAGCTGGAAAATACTCCATGCG

                
        248 TTAA
          1 TTAA

        252 AATTAAGTCT


Statistics
Matches: 50,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  48   50  1.00

ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34


Consensus pattern (48 bp):   
TTAATTGATGTTGTTAAGAGAATTAAAAGCTGGAAAATACTCCATGCG
Done.