Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008568.1 Corchorus olitorius cultivar O-4 contig08595, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1071
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35


Found at i:516 original size:24 final size:24

Alignment explanation


    Indices: 470--516  Score: 94
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        460 TTAATATACC

                                    
        470 CTAATCCTTTTACAAAAATAAATA
          1 CTAATCCTTTTACAAAAATAAATA

                                   
        494 CTAATCCTTTTACAAAAATAAAT
          1 CTAATCCTTTTACAAAAATAAAT

        517 CTTAAAAAAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34


Consensus pattern (24 bp):   
CTAATCCTTTTACAAAAATAAATA
Done.