Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008578.1 Corchorus olitorius cultivar O-4 contig08605, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 734

Length: 1224
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32


Found at i:581 original size:37 final size:37

Alignment explanation


    Indices: 540--619  Score: 151
    Period size: 37  Copynumber: 2.2  Consensus size: 37

        530 CTGCACCCAG

                               *                 
        540 CACCCAGGCCAAACCCAACTTCCATCCCAACAACCAT
          1 CACCCAGGCCAAACCCAACATCCATCCCAACAACCAT

                                                 
        577 CACCCAGGCCAAACCCAACATCCATCCCAACAACCAT
          1 CACCCAGGCCAAACCCAACATCCATCCCAACAACCAT

                  
        614 CACCCA
          1 CACCCA

        620 TCTCCAACAC


Statistics
Matches: 42,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  37   42  1.00

ACGTcount: A:0.36, C:0.50, G:0.05, T:0.09


Consensus pattern (37 bp):   
CACCCAGGCCAAACCCAACATCCATCCCAACAACCAT
Done.