Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008582.1 Corchorus olitorius cultivar O-4 contig08609, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1158
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.35


Found at i:462 original size:19 final size:20

Alignment explanation


    Indices: 438--495  Score: 73
    Period size: 19  Copynumber: 2.9  Consensus size: 20

        428 CTGTTTGGCA

                                
        438 ACTGTACAGATGAGATTA-C
          1 ACTGTACAGATGAGATTAGC

                       *        *
        457 ACTGTACAGATCAGATTAGGT
          1 ACTGTACAGATGAGATTA-GC

                    *         
        478 ACTGTACATATGAGATTA
          1 ACTGTACAGATGAGATTA

        496 TTAGAGCAGC


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  19   17  0.52
  21   16  0.48

ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29


Consensus pattern (20 bp):   
ACTGTACAGATGAGATTAGC

Done.