Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008583.1 Corchorus olitorius cultivar O-4 contig08610, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 975

Length: 1626
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29


Found at i:438 original size:81 final size:82

Alignment explanation


    Indices: 301--463  Score: 319
    Period size: 81  Copynumber: 2.0  Consensus size: 82

        291 CAAGCTTCTC

                                                                             
        301 CAAGCCTCCTTGCCGCATATGCACATCCTCTCCATGATCTCCATTGTGCTCTTCAAGACCATGAT
          1 CAAGCCTCCTTGCCGCATATGCACATCCTCTCCATGATCTCCATTGTGCTCTTCAAGACCATGAT

                             
        366 GAGTCCTTGGCGCATCA
         66 GAGTCCTTGGCGCATCA

                                                                             
        383 CAAGCCTCCTTGCCGCATATGCACATCC-CTCCATGATCTCCATTGTGCTCTTCAAGACCATGAT
          1 CAAGCCTCCTTGCCGCATATGCACATCCTCTCCATGATCTCCATTGTGCTCTTCAAGACCATGAT

                             
        447 GAGTCCTTGGCGCATCA
         66 GAGTCCTTGGCGCATCA

        464 TCATACGAAT


Statistics
Matches: 81,  Mismatches: 0, Indels: 1
        0.99            0.00        0.01

Matches are distributed among these distances:
  81   53  0.65
  82   28  0.35

ACGTcount: A:0.21, C:0.34, G:0.17, T:0.28


Consensus pattern (82 bp):   
CAAGCCTCCTTGCCGCATATGCACATCCTCTCCATGATCTCCATTGTGCTCTTCAAGACCATGAT
GAGTCCTTGGCGCATCA

Found at i:1279 original size:21 final size:21

Alignment explanation


    Indices: 1255--1350  Score: 149
    Period size: 21  Copynumber: 4.6  Consensus size: 21

       1245 CTTAGGCAAT

                    *    *       
       1255 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAACTTGGAACCTTC

                    *            
       1276 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAACTTGGAACCTTC

                                 
       1297 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAACTTGGAACCTTC

                                  
       1318 TCCAATGAACTTGGAA-CTTGC
          1 TCCAATGAACTTGGAACCTT-C

                        
       1339 TCCAATGAACTT
          1 TCCAATGAACTT

       1351 CTAGCATCTT


Statistics
Matches: 71,  Mismatches: 3, Indels: 2
        0.93            0.04        0.03

Matches are distributed among these distances:
  20    3  0.04
  21   68  0.96

ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30


Consensus pattern (21 bp):   
TCCAATGAACTTGGAACCTTC

Done.