Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008592.1 Corchorus olitorius cultivar O-4 contig08619, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 947

Length: 1579
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26


Found at i:1378 original size:16 final size:16

Alignment explanation


    Indices: 1357--1387  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1347 TCCTCCTCTC

                    *       
       1357 TACAATTATTAATAAT
          1 TACAATTAATAATAAT

                           
       1373 TACAATTAATAATAA
          1 TACAATTAATAATAA

       1388 CAATAGGAAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39


Consensus pattern (16 bp):   
TACAATTAATAATAAT

Found at i:1577 original size:16 final size:15

Alignment explanation


    Indices: 1550--1579  Score: 51
    Period size: 16  Copynumber: 1.9  Consensus size: 15

       1540 ATTATTGATT

                           
       1550 AATTAATAATTAATG
          1 AATTAATAATTAATG

                           
       1565 AATTAACTAATTAAT
          1 AATTAA-TAATTAAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40


Consensus pattern (15 bp):   
AATTAATAATTAATG
Done.