Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008595.1 Corchorus olitorius cultivar O-4 contig08622, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 816

Length: 1360
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26


Found at i:893 original size:34 final size:34

Alignment explanation


    Indices: 850--919  Score: 140
    Period size: 34  Copynumber: 2.1  Consensus size: 34

        840 CCAATGCGCC

                                              
        850 TAACTCTATACGATATTCTTTGTATAGCGAGGTT
          1 TAACTCTATACGATATTCTTTGTATAGCGAGGTT

                                              
        884 TAACTCTATACGATATTCTTTGTATAGCGAGGTT
          1 TAACTCTATACGATATTCTTTGTATAGCGAGGTT

              
        918 TA
          1 TA

        920 TAGATAAGGA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   36  1.00

ACGTcount: A:0.27, C:0.14, G:0.17, T:0.41


Consensus pattern (34 bp):   
TAACTCTATACGATATTCTTTGTATAGCGAGGTT
Done.