Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008599.1 Corchorus olitorius cultivar O-4 contig08626, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29


Found at i:730 original size:22 final size:22

Alignment explanation


    Indices: 702--746  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        692 TATCTTCCGG

                                  
        702 GTCTTAAGCGAGTTAAGAGATT
          1 GTCTTAAGCGAGTTAAGAGATT

                                  
        724 GTCTTAAGCGAGTTAAGAGATT
          1 GTCTTAAGCGAGTTAAGAGATT

             
        746 G
          1 G

        747 AGTAGGACTC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31


Consensus pattern (22 bp):   
GTCTTAAGCGAGTTAAGAGATT
Done.