Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008603.1 Corchorus olitorius cultivar O-4 contig08630, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 829

Length: 1383
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.34


Found at i:737 original size:69 final size:70

Alignment explanation


    Indices: 630--769  Score: 219
    Period size: 69  Copynumber: 2.0  Consensus size: 70

        620 AAAACTAACA

                              *   *  *       *      *                        
        630 ACTAAGGAAAAAAATGGTGGGAGCACCATTAATTACATCTCAATGCTAAAATTACATATAAAAAC
          1 ACTAAGGAAAAAAATGGTAGGAACAACATTAATCACATCTAAATGCTAAAATTACATATAAAAAC

                 
        695 AATGC
         66 AATGC

                                                                          *  
        700 ACTAA-GAAAAAAATGGTAGGAACAACATTAATCACATCTAAATGCTAAAATTACATATAAAGAC
          1 ACTAAGGAAAAAAATGGTAGGAACAACATTAATCACATCTAAATGCTAAAATTACATATAAAAAC

                 
        764 AATGC
         66 AATGC

             
        769 A
          1 A

        770 TTTCAAGCAA


Statistics
Matches: 64,  Mismatches: 6, Indels: 1
        0.90            0.08        0.01

Matches are distributed among these distances:
  69   59  0.92
  70    5  0.08

ACGTcount: A:0.50, C:0.15, G:0.13, T:0.22


Consensus pattern (70 bp):   
ACTAAGGAAAAAAATGGTAGGAACAACATTAATCACATCTAAATGCTAAAATTACATATAAAAAC
AATGC
Done.