Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008604.1 Corchorus olitorius cultivar O-4 contig08631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1211
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Found at i:547 original size:21 final size:21

Alignment explanation


    Indices: 509--549  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        499 ATATTCAAGG

                   *     *       
        509 CTAGATTTGAATCTAACACAA
          1 CTAGATTCGAATCAAACACAA

                     *          
        530 CTAGATTCGTATCAAACACA
          1 CTAGATTCGAATCAAACACA

        550 CATCCTCCAT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27


Consensus pattern (21 bp):   
CTAGATTCGAATCAAACACAA
Done.