Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008606.1 Corchorus olitorius cultivar O-4 contig08633, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 847

Length: 1413
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36


Found at i:446 original size:15 final size:15

Alignment explanation


    Indices: 426--455  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        416 TTAATAGAGC

                           
        426 GGTGCGGTAGTGGTG
          1 GGTGCGGTAGTGGTG

                           
        441 GGTGCGGTAGTGGTG
          1 GGTGCGGTAGTGGTG

        456 TGATTGACAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.07, C:0.07, G:0.60, T:0.27


Consensus pattern (15 bp):   
GGTGCGGTAGTGGTG

Found at i:929 original size:2 final size:2

Alignment explanation


    Indices: 922--950  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

        912 TATGAAAGTA

                                                       
        922 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

        951 CACTACATAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.