Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008609.1 Corchorus olitorius cultivar O-4 contig08636, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 629

Length: 1049
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39


Found at i:141 original size:26 final size:26

Alignment explanation


    Indices: 111--167  Score: 78
    Period size: 26  Copynumber: 2.2  Consensus size: 26

        101 TGGTCTTTTT

                        *              
        111 TTTTTACATCCAGGGGCATTTTGGTCA
          1 TTTTTACA-CCAAGGGCATTTTGGTCA

                 *   *                
        138 TTTTTGCACGAAGGGCATTTTGGTCA
          1 TTTTTACACCAAGGGCATTTTGGTCA

                
        164 TTTT
          1 TTTT

        168 AGGTTCACTT


Statistics
Matches: 27,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  26   20  0.74
  27    7  0.26

ACGTcount: A:0.18, C:0.16, G:0.23, T:0.44


Consensus pattern (26 bp):   
TTTTTACACCAAGGGCATTTTGGTCA

Found at i:434 original size:17 final size:16

Alignment explanation


    Indices: 384--425  Score: 66
    Period size: 17  Copynumber: 2.5  Consensus size: 16

        374 CATGTAATCT

                            
        384 TTGATCACCGGTGATC
          1 TTGATCACCGGTGATC

                             
        400 TTGCATCACCGGTGATC
          1 TTG-ATCACCGGTGATC

                     
        417 TTAGATCAC
          1 TT-GATCAC

        426 TAGTGATCTG


Statistics
Matches: 24,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    3  0.12
  17   20  0.83
  18    1  0.04

ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31


Consensus pattern (16 bp):   
TTGATCACCGGTGATC
Done.