Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008614.1 Corchorus olitorius cultivar O-4 contig08641, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 681

Length: 1136
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:284 original size:15 final size:16

Alignment explanation


    Indices: 252--285  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        242 TCGAAATATG

                            
        252 GAGATCATTCCTTCCT
          1 GAGATCATTCCTTCCT

                  *         
        268 GAGATCTTTCC-TCCT
          1 GAGATCATTCCTTCCT

               
        283 GAG
          1 GAG

        286 GCTGCTGACA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    7  0.41
  16   10  0.59

ACGTcount: A:0.18, C:0.29, G:0.18, T:0.35


Consensus pattern (16 bp):   
GAGATCATTCCTTCCT
Done.