Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000862.1 Corchorus olitorius cultivar O-4 contig00862, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 930

Length: 1551
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35


Found at i:865 original size:16 final size:15

Alignment explanation


    Indices: 832--862  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        822 ATAATTTCAA

                      *    
        832 TAAAATAAAATATAT
          1 TAAAATAAAAAATAT

                           
        847 TAAAATAAAAAATAT
          1 TAAAATAAAAAATAT

             
        862 T
          1 T

        863 TAATTTTTAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (15 bp):   
TAAAATAAAAAATAT
Done.