Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008623.1 Corchorus olitorius cultivar O-4 contig08650, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 824

Length: 1374
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.37


Found at i:1317 original size:60 final size:57

Alignment explanation


    Indices: 1219--1334  Score: 142
    Period size: 58  Copynumber: 2.0  Consensus size: 57

       1209 ATAGCATCAT

                      *                *                               
       1219 GTCTCGGTCCTAAAACGTCTTTTTTAGGCATCTAATAAAAAAAACATGTCACTCGATAA
          1 GTCTCGGTCCGAAAACGTCTTTTTTAGACATCTAAT--AAAAAACATGTCACTCGATAA

                *           *          *            *           *    
       1278 GTCTTGGTCCGAAAACTTCTTTTTTTATACATCTAATAAAGAACATGTCACTTGATA
          1 GTCTCGGTCCGAAAACGTC-TTTTTTAGACATCTAATAAAAAACATGTCACTCGATA

       1335 TTTGATTAAT


Statistics
Matches: 49,  Mismatches: 7, Indels: 3
        0.83            0.12        0.05

Matches are distributed among these distances:
  58   18  0.37
  59   16  0.33
  60   15  0.31

ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34


Consensus pattern (57 bp):   
GTCTCGGTCCGAAAACGTCTTTTTTAGACATCTAATAAAAAACATGTCACTCGATAA
Done.