Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008625.1 Corchorus olitorius cultivar O-4 contig08652, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2001
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31


Found at i:1282 original size:12 final size:12

Alignment explanation


    Indices: 1266--1309  Score: 52
    Period size: 12  Copynumber: 3.7  Consensus size: 12

       1256 GGATTCTAGT

                       *
       1266 ATTTATTTATTT
          1 ATTTATTTATTA

                    *   
       1278 ATTTATTTGTTA
          1 ATTTATTTATTA

               *   *    
       1290 ATTAATTAATTA
          1 ATTTATTTATTA

                    
       1302 ATTTATTT
          1 ATTTATTT

       1310 TGCCCTAATA


Statistics
Matches: 25,  Mismatches: 7, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66


Consensus pattern (12 bp):   
ATTTATTTATTA
Done.