Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008628.1 Corchorus olitorius cultivar O-4 contig08655, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2448
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33


Found at i:1266 original size:11 final size:11

Alignment explanation


    Indices: 1246--1276  Score: 53
    Period size: 11  Copynumber: 2.8  Consensus size: 11

       1236 GAAAATAAGG

                 *     
       1246 AAGAAGAAAAA
          1 AAGAAAAAAAA

                       
       1257 AAGAAAAAAAA
          1 AAGAAAAAAAA

                     
       1268 AAGAAAAAA
          1 AAGAAAAAA

       1277 GGGAAGGGAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00


Consensus pattern (11 bp):   
AAGAAAAAAAA

Found at i:1586 original size:51 final size:51

Alignment explanation


    Indices: 1510--1608  Score: 189
    Period size: 51  Copynumber: 1.9  Consensus size: 51

       1500 AGTCATGTAA

                                                               
       1510 CAAAACTCTTTCTAATTTCAGACATGTGGACCCCACACATGGCATAAATAG
          1 CAAAACTCTTTCTAATTTCAGACATGTGGACCCCACACATGGCATAAATAG

                                                 *          
       1561 CAAAACTCTTTCTAATTTCAGACATGTGGACCCCACATATGGCATAAA
          1 CAAAACTCTTTCTAATTTCAGACATGTGGACCCCACACATGGCATAAA

       1609 AAAAGTTGAC


Statistics
Matches: 47,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  51   47  1.00

ACGTcount: A:0.35, C:0.25, G:0.13, T:0.26


Consensus pattern (51 bp):   
CAAAACTCTTTCTAATTTCAGACATGTGGACCCCACACATGGCATAAATAG
Done.