Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008631.1 Corchorus olitorius cultivar O-4 contig08658, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2775
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34


Found at i:2318 original size:30 final size:27

Alignment explanation


    Indices: 2268--2350  Score: 112
    Period size: 30  Copynumber: 3.0  Consensus size: 27

       2258 GTTAATTTAG

                                       
       2268 ACTTATTATTATTATAATAATTATTAA
          1 ACTTATTATTATTATAATAATTATTAA

                              *           
       2295 ACTTATTATTAGTGGTATTATAATTATTAA
          1 ACTTATTATTA-T--TATAATAATTATTAA

                        *     *       
       2325 ACTTATTATTATAATAATTATTATTA
          1 ACTTATTATTATTATAATAATTATTA

       2351 TTAGTGGTAT


Statistics
Matches: 49,  Mismatches: 4, Indels: 6
        0.83            0.07        0.10

Matches are distributed among these distances:
  27   22  0.45
  28    1  0.02
  29    1  0.02
  30   25  0.51

ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52


Consensus pattern (27 bp):   
ACTTATTATTATTATAATAATTATTAA

Done.