Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008633.1 Corchorus olitorius cultivar O-4 contig08660, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1096
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:859 original size:29 final size:30

Alignment explanation


    Indices: 782--861  Score: 90
    Period size: 31  Copynumber: 2.7  Consensus size: 30

        772 TGACTAAAAT

                              *     **     
        782 CTCAATTTAGTACTAAACGTTTAATGTTGCA
          1 CTCAATTTAGTACTAAACCTTTAAAATTG-A

               *      *  *                
        813 CTCGATTTAGAACCAAACCTTTAAAATTG-
          1 CTCAATTTAGTACTAAACCTTTAAAATTGA

                                
        842 CTCAATTTAGTACTAAACCT
          1 CTCAATTTAGTACTAAACCT

        862 CATTGAATTA


Statistics
Matches: 40,  Mismatches: 9, Indels: 2
        0.78            0.18        0.04

Matches are distributed among these distances:
  29   17  0.43
  31   23  0.57

ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35


Consensus pattern (30 bp):   
CTCAATTTAGTACTAAACCTTTAAAATTGA
Done.