Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008634.1 Corchorus olitorius cultivar O-4 contig08661, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 801

Length: 1335
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34


Found at i:305 original size:19 final size:19

Alignment explanation


    Indices: 281--317  Score: 74
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        271 TTCTAATGTC

                               
        281 TATTCAAATAATTATCTAA
          1 TATTCAAATAATTATCTAA

                              
        300 TATTCAAATAATTATCTA
          1 TATTCAAATAATTATCTA

        318 TTGGATCCCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43


Consensus pattern (19 bp):   
TATTCAAATAATTATCTAA
Done.