Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008636.1 Corchorus olitorius cultivar O-4 contig08663, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 710

Length: 1184
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33


Found at i:487 original size:13 final size:13

Alignment explanation


    Indices: 469--493  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        459 GCCCAGCGGC

                         
        469 CTGCTGGCCTGGT
          1 CTGCTGGCCTGGT

                        
        482 CTGCTGGCCTGG
          1 CTGCTGGCCTGG

        494 CTTGCCGGCC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.00, C:0.32, G:0.40, T:0.28


Consensus pattern (13 bp):   
CTGCTGGCCTGGT
Done.