Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008638.1 Corchorus olitorius cultivar O-4 contig08665, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1046
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.30


Found at i:586 original size:13 final size:13

Alignment explanation


    Indices: 568--595  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

        558 ATTTTTTTTT

                         
        568 TAAAGTATTCACC
          1 TAAAGTATTCACC

                         
        581 TAAAGTATTCACC
          1 TAAAGTATTCACC

              
        594 TA
          1 TA

        596 TTTCCTCCCC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.39, C:0.21, G:0.07, T:0.32


Consensus pattern (13 bp):   
TAAAGTATTCACC

Found at i:744 original size:7 final size:7

Alignment explanation


    Indices: 732--756  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

        722 TAAAGAAATT

                   
        732 AAAAGGG
          1 AAAAGGG

                   
        739 AAAAGGG
          1 AAAAGGG

                   
        746 AAAAGGG
          1 AAAAGGG

                
        753 AAAA
          1 AAAA

        757 ACTCAATTGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (7 bp):   
AAAAGGG
Done.