Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008639.1 Corchorus olitorius cultivar O-4 contig08666, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 813

Length: 1355
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32


Found at i:969 original size:24 final size:24

Alignment explanation


    Indices: 913--987  Score: 89
    Period size: 24  Copynumber: 3.1  Consensus size: 24

        903 ATAATTATAA

                  *               *  
        913 TTCTTTCAAATATTCTCTCTAAATT
          1 TTCTTTAAAATATTCTCTCT-ATTT

               *                    
        938 TTCATTAAAATATTCTCTCTATTT
          1 TTCTTTAAAATATTCTCTCTATTT

                               *     
        962 TTCTTTAAAATA-TCTTCTTTATTT
          1 TTCTTTAAAATATTC-TCTCTATTT

              
        986 TT
          1 TT

        988 AATTGCTCAA


Statistics
Matches: 44,  Mismatches: 5, Indels: 3
        0.85            0.10        0.06

Matches are distributed among these distances:
  23    2  0.05
  24   24  0.55
  25   18  0.41

ACGTcount: A:0.27, C:0.16, G:0.00, T:0.57


Consensus pattern (24 bp):   
TTCTTTAAAATATTCTCTCTATTT
Done.