Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008642.1 Corchorus olitorius cultivar O-4 contig08669, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.31


Found at i:650 original size:21 final size:22

Alignment explanation


    Indices: 626--681  Score: 89
    Period size: 21  Copynumber: 2.6  Consensus size: 22

        616 GCGTTTGTGG

                                  
        626 CTTCTTCTCGGCGCTTT-GCCT
          1 CTTCTTCTCGGCGCTTTCGCCT

                                  
        647 CTTCTTCTCGGCG-TTTCGCCT
          1 CTTCTTCTCGGCGCTTTCGCCT

                *         
        668 CTTCATCTCGGCGC
          1 CTTCTTCTCGGCGC

        682 ACTAATTCTT


Statistics
Matches: 32,  Mismatches: 1, Indels: 3
        0.89            0.03        0.08

Matches are distributed among these distances:
  20    3  0.09
  21   29  0.91

ACGTcount: A:0.02, C:0.39, G:0.20, T:0.39


Consensus pattern (22 bp):   
CTTCTTCTCGGCGCTTTCGCCT
Done.